Geneious

Inspirational Software for Biologists

Features of Geneious Pro

Geneious Pro™ is an integrated and extendable software platform for the organization and analysis of biological data that runs on all major operating systems. Geneious Pro is a revolutionary bioinformatic tool that combines industry-leading DNA and protein analysis tools into a single package that is both ultra-powerful and easy to use. Scientists, researchers and students are able to search, organize and analyze genomic and protein information of any size via a single powerful desktop program that provides publication-ready images to enhance the impact of your research.

Download an unrestricted 14-day free trial, browse around our comprehensive list of the technical features, check out the benefits of Geneious Pro, or get going immediately with the Quickstart manual.

NGS Assembly

  • Assemble 454, SOLiD™ and Illumina™
  • Reference and de novo assembly
  • Hybrid (mixed data) assembly
  • Paired-end and mate pair assembly
  • Velvet, Maq, Bowtie on Geneious Server™

Chromatogram Assembly

  • Chromatogram assembly of Sanger data
  • Import Sequencher data from .CAF file
  • Assemble by name
  • Call secondary peaks
  • Phase variation and heterozygous INDELs (coming soon!)

Alignment

  • ClustalW (Greenbutton™ enabled)
  • MUSCLE and MAFFT alignment
  • Kalign plugin (coming soon)
  • Translation and profile alignment
  • MAUVE genome alignment

Phylogenetics

  • MrBayes (Greenbutton™ enabled)
  • PAUP* interface including ModelTest
  • NJ, UPGMA and PhyML
  • Bootstrapping and consensus trees
  • Interactive tree viewing

Cloning

  • Restriction digest
  • Show non-cutting enzymes
  • Virtual gel
  • One-step insert fragment into vector
  • Three-step Gateway® cloning

Primer Design

  • PCR primers and probes with Primer3
  • Primers on alignments and assemblies
  • Built-in primer database
  • Test existing primers vs sequence
  • Sequencing & multiplex primers (coming soon)

Database Search

  • BLAST and custom BLAST search
  • Local search
  • Sequence search
  • Literature search
  • Automated search agents

Predict, Manipulate and Annotate

  • ORFs, repeats, CpG islands
  • SNPs, INDELs, CNVs
  • Protein secondary structure
  • Cleavage sites, transcription factors
  • Antigenic regions, Pfam domains

Visualizations

  • 3D structures
  • Sequences, alignments, assemblies
  • Annotations, SNPs, restriction sites
  • Phylogenetics trees
  • Dot plot, virtual gel
  • RNA secondary structure