Geneious Prime
Geneious Biologics
PDB Structure Aligner
Structural alignment of PDB protein sequences
Requires Geneious 4.8+
Align two protein structures in 3D space to produce a combined structure with the two overlayed. Structures can be obtained by importing PDB files or downloading directly from the NCBI Structure service in Geneious.
Install the plugin by downloading the gplugin file and dragging it in to Geneious or use the plugin manager in Geneious (under Tools - Plugins in the menu).
Once installed, run the plugin by selecting two protein structures and clicking on Align/Assemble - Protein Structure Alignment in the toolbar.