Repeat Finder
Find large, distant repeats
Requires Geneious 9.0+
Install the plugin by downloading the gplugin file and dragging it in to Geneious or use the plugin manager in Geneious (under Tools - Plugins in the menu).
Once installed, run the plugin by selecting a nucleotide sequence and choosing Annotate & Predict - Find Repeats from the menu. Results are saved as annotations on your sequence.