Map to Reference
Use the map to reference tool to map next-generation sequencing data against a reference, and assemble coronavirus genomes.
Map NGS Reads to a Reference
INSIDE THE VIDEO
Select a reference sequence, choose a mapping algorithm, set the sensitivity and map to reference.
LENGTH
3 minutes
Explore Contig Documents
INSIDE THE VIDEO
View the consensus sequence and quickly identify high or low coverage regions using the coverage graph.
LENGTH
3 minutes
Assemble Coronavirus Genomes
INSIDE THE VIDEO
A workflow for assembly of coronavirus genomes generated by tiled amplicon RT-PCR followed by Illumina sequencing.
LENGTH
4 minutes
Recommended Resources
MAP TO REFERENCE
TUTORIAL
Practice Mapping and SNP Calling
A practical exercise in reference assembly using next-gen sequencing data.
FAQ
Which map to reference assembly algorithm is best for my data?
Advantages and disadvantages of different map to reference algorithms.
FAQ
What function should I use?
The difference between Pairwise/Multiple alignment, de novo Assembly, and Map to Reference.
GENEIOUS ACADEMY
