Pairwise Alignment
Use a dot plot to view regions of similarity then determine homology with pairwise alignment of related sequences.
Using Dot Plots to View Similarity
INSIDE THE VIDEO
View and customize dot plots, view sequence inversions and repeating patterns in the sequence.
LENGTH
3 minutes
Pairwise Alignment of DNA Sequences
INSIDE THE VIDEO
How to perform a pairwise alignment, choose an alignment algorithm and optimize and refine your alignments.
LENGTH
6 minutes
Recommended Resources
PAIRWISE ALIGNMENT
TUTORIAL
Practice Pairwise Alignment
Align pairs of DNA and protein sequences with these practical exercises.
FAQ
Can I call SNPs on individual sequences aligned to a reference?
Learn how to call SNPs on the pairwise alignment/assembly.
FAQ
What function should I use?
The difference between Pairwise/Multiple alignment, de novo Assembly, and Map to Reference.
GENEIOUS ACADEMY
