Cited Publications

Geneious Prime is the world’s most cited sequence analysis software. Read a selection of the over 5,000 papers citing Geneious published each year.

ACS Synthetic Biology, 2018

Direct Pathway Cloning Combined with Sequence- and Ligation-Independent Cloning for Fast Biosynthetic Gene Cluster Refactoring and Heterologous Expression

Paul M. D’Agostino and Tobias A. M. Gulder

Technical University of Munich, Germany

 

Journal of Virological Methods, 2017

Quantifying low-frequency revertants in oral poliovirus vaccine using next generation sequencing

Eric Sarcey, Aurélie Serres, Fabrice Tindy, Audrey Chareyre, Siemon Ng, Marine Nicolas, Emmanuelle Vetter, Thierry Bonnevay, Eric Abachin, Laurent Mallet

Sanofi Pasteur, France; Sanofi Pasteur, Canada

 

Parasites and Vectors, 2017

The novel isoxazoline ectoparasiticide lotilaner (Credelio™): a non-competitive antagonist specific to invertebrates γ-aminobutyric acid-gated chloride channels (GABACls)

Lucien Rufener, Vanessa Danelli, Daniel Bertrand and Heinz Sager

Elanco Animal Health, Switzerland; HiQScreen Sàrl, Switzerland

 

Cell, 2017

Discovery of Reactive Microbiota-Derived Metabolites that Inhibit Host Proteases

Chun-Jun Guo, Fang-Yuan Chang, Thomas P. Wyche, Keriann M. Backus, Timothy M. Acker, Masanori Funabashi, Mao Taketani, Mohamed S. Donia, Stephen Nayfach, Katherine S.Pollard, Charles S. Craik, Benjamin F. Cravatt, Jon Clardy, Christopher A. Voigt, Michael A. Fischbach

University of California, San Francisco, USA; Massachusetts Institute of Technology, USA; Harvard Medical School, USA; The Scripps Research Institute, USA; Princeton University, USA

 

Nature Communications, 2018

Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates

Philip Webster, Joanna C. Dawes, Hamlata Dewchand, Katalin Takacs, Barbara Iadarola, Bruce J. Bolt, Juan J. Caceres, Jakub Kaczor, Gopuraja Dharmalingam, Marian Dore, Laurence Game, Thomas Adejumo, James Elliott, Kikkeri Naresh, Mohammad Karimi, Katerina Rekopoulou, Ge Tan, Alberto Paccanaro & Anthony G. Uren

MRC London Institute of Medical Sciences (LMS), UK;  Imperial College London, UK; Imperial College Healthcare NHS Trust, UK; University of London, UK

 

Journal of Clinical Microbiology, 2017

Genomic characterization of urethritis-associated Neisseria meningitidis shows that a wide range of N. meningitidis strains can cause urethritis

Kevin C. Ma, Magnus Unemo, Samo Jeverica, Robert D. Kirkcaldy, Hideyuki Takahashi, Makoto Ohnishi, Yonatan H. Grad

Harvard T.H. Chan School of Public Health, USA;  Örebro University, Sweden; University of Ljubljana, Slovenia;  CDC, USA; National Institute of Infectious Diseases, Japan; Brigham and Women’s Hospital and Harvard Medical School, USA

 

Journal of Clinical Investigation, 2018

HIV- latent reservoir size and diversity are stable following brief treatment interruption

Brenda Salantes, Yu Zheng, Felicity Mampe, Tuhina Srivastava, Subul Beg, Jun Lai, Jonathan Z. Li, Randall L. Tressler, Richard A. Koup, James Hoxie, Mohamed Abdel-Mohsen, Scott Sherrill-Mix, Kevin McCormick, E. Turner Overton, Frederic D. Bushman, Gerald H. Learn, Robert F. Siliciano, Janet M. Siliciano, Pablo Tebas, and Katharine J. Bar

University of Pennsylvania, USA; Harvard University, USA; Johns Hopkins University School of Medicine, USA; NIAID, NIH, USA; Wistar Institute, USA; University of Alabama at Birmingham, USA

 

Nucleic Acids Research, 2015

antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

Weber T, Blin K, Duddela S, Krug D, Kim HU, Bruccoleri R, Lee SY, Fischbach MA, Müller R, Wohlleben W, Breitling R, Takano E, Medema MH.

Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Denmark; Helmholtz Institute for Pharmaceutical Research Saarland, Germany; Saarland University, Germany; DZIF, Germany; Korea Advanced Institute of Science and Technology, Republic of Korea; Congenomics, USA; UCSF,, USA; Eberhard Karls University of Tubingen, Germany; SYNBIOCHEM, University of Manchester, UK; Max Planck Institute for Marine Microbiology, Germany; Wageningen University, The Netherlands

 

Blood Cancer Journal, 2018

The prognostic significance of global aberrant alternative splicing in patients with myelodysplastic syndrome

Yi-Tsung Yang, Yu-Chiao Chiu, Chein-Jun Kao, Hsin-An Hou, Chien-Chin Lin, Cheng-Hong Tsai, Mei-Hsuan Tseng, Wen-Chien Chou & Hwei-Fang Tien

National Taiwan University, Taiwan; UT Health San Antonio, USA

 

European Journal of Human Genetics, 2017

Non-coding variants contribute to the clinical heterogeneity of TTR amyloidosis

Andrea Iorio, Antonella De Lillo, Flavio De Angelis, Marco Di Girolamo, Marco Luigetti, Mario Sabatelli, Luca Pradotto, Alessandro Mauro, Anna Mazzeo, Claudia Stancanelli, Federico Perfetto, Sabrina Frusconi, Filomena My, Dario Manfellotto, Maria Fuciarelli & Renato Polimanti

University of Rome Tor Vergata, Italy; ‘San Giovanni Calibita’ Fatebenefratelli Hospital, Italy; Fondazione Policlinico Universitario A. Gemelli, Italy; Centro Clinico NEMO, Italy; IRCCS-Istituto Auxologico Italiano, Italy; University of Turin, Italy; University of Messina, Italy; Azienda Ospedaliero-Universitaria Careggi, Italy; Careggi University Hospital, Italy; Vito Fazzi Hospital, Italy; Yale University School of Medicine, USA; VA CT Healthcare Center, USA

 

NPJ Vaccines, 2017

Cross-neutralisation of viruses of the tick-borne encephalitis complex following tick-borne encephalitis vaccination and/or infection

Alexander J. McAuley, Bevan Sawatsky, Thomas Ksiazek, Maricela Torres, Miša Korva, Stanka Lotrič-Furlan, Tatjana Avšič-Županc, Veronika von Messling, Michael R. Holbrook, Alexander N. Freiberg, David W. C. Beasley & Dennis A. Bente

University of Texas Medical Branch, USA; Paul-Ehrlich-Institut, Germany; University of Ljubljana, Slovenia; University Medical Center Ljubljana, Slovenia; National Institutes of Health, USA

 

ChemCatChem, 2016

Characterization of Carboxylic Acid Reductases as Enzymes in the Toolbox for Synthetic Chemistry

Dr. William Finnigan, Adam Thomas, Holly Cromar, Ben Gough, Dr. Radka Snajdrova, Dr. Joseph P. Adams, Prof. Dr. Jennifer A. Littlechild, Dr. Nicholas J. Harmer

University of Exeter, UK; GlaxoSmithKline R&D Ltd, Medicines Research Centre, UK

 

Frontiers in Microbiology, 2018

The PL6-Family Plasmids of Haloquadratum Are Virus-Related

Mike Dyall-Smith and Friedhelm Pfeiffer

Max Planck Institute of Biochemistry, Germany; University of Melbourne, Australia

 

Journal of Plant Physiology, 2017

Molecular cloning and functional characterization of a monoterpene synthase isolated from the aromatic wild shrub Thymus albicans

Alexandra Filipe, João C.R. Cardoso, Graça Miguel, Liliana Anjos, Helena Trindad, Ana Cristina Figueiredo, José Barroso, Deborah M. Power, Natália T. Marques

Universidade do Algarve, Portugal; Universidade de Lisboa, Portugal

 

BMC Genomics, 2018

The genome of a prasinoviruses-related freshwater virus reveals unusual diversity of phycodnaviruses

Hao Chen, Weijia Zhang, Xiefei Li, Yingjie Pan, Shuling Yan and Yongjie Wang

Shanghai Ocean University, China; Copenhagen University, Denmark; Ministry of Agriculture, China; University of Göttingen, Germany; Shanghai Ocean University, China

 

Virology Journal, 2018

Phylogenetic analysis of the wild-type strains of canine distemper virus circulating in the United States

Eman Anis, Teresa K. Newell, Neil Dyer and Rebecca P. Wilkes

University of Georgia, USA; University of Sadat, Egypt; North Dakota State University, USA

 

Nature Communications, 2018

Target identification of small molecules using large-scale CRISPR-Cas mutagenesis scanning of essential genes

Jasper Edgar Neggers, Bert Kwanten, Tim Dierckx, Hiroki Noguchi, Arnout Voet, Lotte Bral, Kristien Minner, Bob Massant, Nicolas Kint, Michel Delforge, Thomas Vercruysse, Erkan Baloglu, William Senapedis, Maarten Jacquemyn & Dirk Daelemans

Rega Institute for Medical Research, Belgium; University Hospital Leuven, Belgium; Karyopharm Therapeutics Inc, USA

 

PLOS One, 2017

Merging FT-IR and NGS for simultaneous phenotypic and genotypic identification of pathogenic Candida species

Claudia Colabella,  Laura Corte, Luca Roscini,  Volha Shapaval, Achim Kohler,  Valeria Tafintseva, Carlo Tascini,  Gianluigi Cardinali

University of Perugia, Italy; Norwegian University of Life Sciences, Norway; Azienda Ospedaliera dei Colli—Ospedale Cotugno, Italy

 

Computers in Biology and Medicine, 2018

The zinc transporter SLC39A7 (ZIP7) harbours a highly-conserved histidine-rich N-terminal region that potentially contributes to zinc homeostasis in the endoplasmic reticulum

John Adulcikas, Shaghayegh Norouzi, Lawrence Bretag, Sukhwinder Singh Sohal, Stephen Myers

University of Tasmania, Australia

 

Viruses, 2018

Pseudomonas PB-Like Phages: Whole Genomes from Metagenomes Offer Insight into an Abundant Group of Bacteriophages

Siobhan C. Watkins, Emily Sible and Catherine Putonti

Loyola University Chicago, USA

 

Molecular Phylogenetics and Evolution, 2018

Cryptic lineage differentiation among Indo-Pacific bottlenose dolphins (Tursiops aduncus) in the northwest Indian Ocean

H.W.I. Graya, S. Nishidab, A.J. Welcha, A.E. Mourac, S. Tanabed, M.S. Kianie, R. Cullochf, L. Möllerg, A. Natolih, L.S. Ponnampalami, G. Mintonj, M. Gorek, T. Collinsl, A. Willsonm, R. Baldwinm, A.R. Hoelzela

University of Durham, UK; University of Miyazaki, Japan; University of Lincoln, UK; Ehime University, Japan; University of Karachi, Pakistan; Queen’s University Belfast, UK; Flinders University, Australia; UAE Dolphin Project, United Arab Emirates; University of Malaya, Malaysia; Megaptera Marine Consulting, The Netherlands; Marine Conservation International, UK; Wildlife Conservation Society Ocean Giants Program, USA; Five Oceans Environmental Services, Oman

 

PLOS One, 2018

Understanding plastome evolution in Hemiparasitic Santalales: Complete chloroplast genomes of three species, Dendrotrophe varians, Helixanthera parasitica, and Macrosolen cochinchinensis

Hye Woo Shin, Nam Sook Lee

Ewha Womans University, Korea

 

Molecular Therapy, 2018

Bioengineered AAV Capsids with Combined High Human Liver Transduction In Vivo and Unique Humoral Seroreactivity

Nicole K. Paulk, Katja Pekrun, Erhua Zhu, Sean Nygaard, Bin Li, Jianpeng Xu, Kirk Chu, Christian Leborgne, Allison P. Dane, Annelise Haft, Yue Zhang, Feijie Zhang, Chris Morton, Marcus B. Valentine, Andrew M. Davidoff, Amit C. Nathwani, Federico Mingozzi, Markus Grompe, Mark A. Kay

Stanford University, USA; University of Sydney, Australia; Oregon Health & Science University, USA; Genethon and INSERM U951, France; UCL Cancer Institute, UK; St. Jude Children’s Research Hospital, UK

 

Virus Research, 2018

Molecular characterization of complete genome of a canine distemper virus associated with fatal infection in dogs in Gabon, Central Africa

Gael D.Maganga, Ingrid Labouba, Barthélémy Ngoubangoye, Andriniaina A.Nkili-Meyong, Daniel Obame Ondo, Eric M.Leroy, Nicolas Berthet

CIRMF, Gabon; USTM, Gabon; Ministère de l’agriculture et de l’élevage, Gabon; MIVEGEC, France; CNRS UMR3569, France; Institut Pasteur, France

 

American Journal of Botany, 2018

Total duplication of the small single copy region in the angiosperm plastome: Rearrangement and inverted repeat instability in Asarum

Brandon T. Sinn  Dylan D. Sedmak Lawrence M. Kelly  John V. Freudenstein

The Ohio State University Museum of Biological Diversity, USA; West Virginia University, USA; New York Botanical Garden, USA

 

Nature Structural & Molecular Biology, 2018

Screening, large-scale production and structure-based classification of cystine-dense peptides

Colin E. Correnti, Mesfin M. Gewe, Christopher Mehlin, Ashok D. Bandaranayake, William A. Johnsen, Peter B. Rupert, Mi-Youn Brusniak, Midori Clarke, Skyler E. Burke, Willem De Van Der Schueren, Kristina Pilat, Shanon M. Turnbaugh, Damon May, Alex Watson, Man Kid Chan, Christopher D. Bahl, James M. Olson & Roland K. Strong

Fred Hutchinson Cancer Research Center, USA; University of Washington, USA

 

Journal of Phycology, 2018

Origin and evolution of chloroplast group I introns in lichen algae

Alicia del Hoyo  Raquel Álvarez Francisco Gasulla  Leonardo Mario Casano Eva María del Campo

University of Alcalá, Spain

 

BMC Genomics, 2017

Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution

Chao-Nan Fu, Hong-Tao Li, Richard Milne, Ting Zhang, Peng-Fei Ma, Jing Yang, De-Zhu Li and Lian-Ming Gao

Chinese Academy of Sciences, China; University of Edinburgh, UK

 

Virology, 2017

Genotypic and epitope characteristics of group A porcine rotavirus strains circulating in Canada

Omer Naseer, Matthew C. Jarvis, Max Ciarlet, Douglas G. Marthaler

University of Veterinary and Animal Sciences, Pakistan; University of Minnesota, USA; GlaxoSmithKline Vaccines, USA

 

New England Journal of Medicine, 2015

Human Infection with a Zoonotic Orthopoxvirus in the Country of Georgia

Neil M. Vora, M.D., Yu Li, Ph.D., Marika Geleishvili, M.D., Ginny L. Emerson, Ph.D., Ekaterine Khmaladze, M.D., Giorgi Maghlakelidze, D.V.M., Archil Navdarashvili, M.D., Khatuna Zakhashvili, M.D., Maka Kokhreidze, D.V.M., Marina Endeladze, M.D., Gela Mokverashvili, D.V.M., P.S. Satheshkumar, Ph.D

Centers for Disease Control and Prevention (CDC), USA; CDC Georgia Country Office, Georgia; National Center for Disease Control and Public Health, Georgia; Laboratory of the Ministry of Agriculture, Georgia