Streamlined Microsatellite Genotyping
The free Geneious microsatellite plugin imports ABI fragment analysis files and allows you to visualize traces, fit ladders, call peaks, predict bins, display alleles in a tabular format and export your data for further analysis.
Take control of your microsatellite analysis and easily resolve problems with dirty data
Good data? Automatic curve-fitting, peak finding and bin calling to quickly discover your allele frequencies
Dirty data? Manually adjust curves, peaks, ladders and bins with full control to call even the most challenging alleles
Elegant allele table view and easy CSV format export
View results in the Alleles Table viewer and export your alleles, peak calls and bins to Excel for further analysis.
Seamlessly synchronize cloning and primer design experiments with your fragment analysis results
Keep your primer and PCR experiment designs, results and annotations together with fragment analysis results. Geneious Prime integrates the industry leading Primer3 primer design program and you can complete a workflow for cloning.
Resources
MICROSATELLITES
How To Guide
Getting started with microsatellites in Geneious Prime
Microsatellites Tutorial
Learn how to use the Microsatellite plugin for Geneious to fit a ladder, call peaks, bin alleles and produce a table of genotypes.
Microsatellites Plugin
Download the Microsatellite plugin for Geneious for streamlined microsatellite genotyping
Manual: Microsatellites
Instructions for using the Microsatellites plugin in Geneious Prime
LEARN GENEIOUS PRIME
Learn: Assembly and Mapping
Learn how to assemble and map NGS reads and chromatogram sequences with videos and tutorials.
Learn: Sequence Analysis
Learn how to do downstream analyses including expression analysis, metagenomics and microsatellite analysis.
EXPLORE GENEIOUS PRIME
Sanger Sequencing
Trim, assemble, and view Sanger sequencing trace files. Powerful SNP detection and variant calling.
Primer Design
PCR and sequencing primer design tool. Primer database and testing.
Import Data
Import and convert common file types as well as their annotations and notes with a simple drag and drop
@Geneious totally saves the day when scoring #microsatellites!
— Jonathan B. Koch (@jonbkoch) April 29, 2015
@Geneious microsatellite plugin is my jam. Peaks, peaks, peaks!
— Rob Denton (@RD_Denton) March 5, 2015