Contig Sorter
Sorts sequences in a contig according to the position of their first non-gap base.
Requires Geneious 5.0+
Sorts sequences in a contig according to the position of their first non-gap base.
Install the plugin by downloading the gplugin file and dragging it in to Geneious Prime or use the plugin manager in Geneious Prime (under Tools - Plugins in the menu).