InterProScan

Automatically annotate proteins with InterPro domains

Download plugin

Requires Geneious 9.0+

  • Open Source
InterProScan is a tool to automatically annotate proteins with families and domains.  It runs the search tools of the databases included in InterPro, (hmmer, ProfileScan and others) and then maps the search results to entries in the InterPro database.

By Michael Thon

Quick Start

Install the plugin by downloading the gplugin file and dragging it in to Geneious or use the plugin manager in Geneious (under Tools - Plugins in the menu).

Once installed, run the plugin by selecting a protein sequence and choosing Annotate & Predict - Find protein domains with InterProScan from the menu. Results are saved as annotations on your sequence.

History

1.1.4 (14 Mar 2017) – Download

  • Improves performance when the InterProScan server is under load
  • Addresses a compatibility issue with Geneious 10.1.2
  • Compatible with Geneious version 9+

1.1.0 (31 May 2016) – Download

  • Added support for Geneious workflows
  • Compatible with Geneious versions R6, 7, 8
  • Compatible with InterProScan version 5

0.1.7 (09 Dec 2010) – Download

  • Improved stability

Citing

Quevillon E., Silventoinen V., Pillai S., Harte N., Mulder N., Apweiler R., Lopez R. (2005).InterProScan: protein domains identifier.Nucleic Acids Res. 33 (Web Server issue): W116-W120