Study diversity with 16s rRNA
Select your microbial species and choose your alignment method, then build a phylogenetic tree based on your alignment.
Discover new microbes
Geneious is great for metagenomic applications. Trim and filter sequences to remove poor-quality sequences.
Investigate large genomic events such as horizontal gene transfer
Align whole genomes with MAUVE.
Bin sequences into clusters using de-novo assembler
Assemble short reads with Velvet. Filter sequences based on length to remove sequences that are too short after trimming.
Find novel or pathogenic mutational variants using re-sequencing
Download a reference sequences and map your microbe against it.
Find genes in microbial DNA
Download bacterial genome annotations
Directly download fully annotated reference genomes.
Design cloning PCR experiments
One-step in-silico molecular cloning and PCR operations. Design primers for areas of interest using Primer3.
Download information on eukaryotic pathogens
Connect Geneious with PlasmoDB and PiroplasmaDB.