EMBOSS Nucleotide

Predict transcription factors and protein coding regions

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Requires Geneious 8.0+

    This plugin includes two nucleotide analysis tools from the EMBOSS package: tfscan to search for transcription factors, and tcode to show a protein coding prediction graph.

    Quick Start

    Install the plugin by downloading the gplugin file and dragging it in to Geneious or use the plugin manager in Geneious (under Tools - Plugins in the menu).

    Once installed, run the plugin by selecting a nucleotide sequence and choosing Search for Transcription Factors in the Annotate & Predict menu or by turning on the Protein Coding Prediction graph in the Sequence View options.

    History

    1.1.1 (29 Oct 2018) – Download

    – Fixed crash and/or incorrect results from protein prediction graph on sequences containing ? characters

    – Fixed failure to draw graph after choosing invalid options and then changing the options to be valid again

    – Fixed out of memory error with long error messages

    1.1 (02 Dec 2014) – Download

    – Fixed crash and/or incorrect results from protein prediction graph on sequences containing ? characters
    – Fixed failure to draw graph after choosing invalid options and then changing the options to be valid again

    Citing

    EMBOSS: The European Molecular Biology Open Software Suite (2000)
    Rice,P. Longden,I. and Bleasby,A.
    Trends in Genetics 16, (6) pp276--277