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Geneious Prime Plugins
Extend the functionality and features of Geneious Prime with plugins for assembly, alignment, phylogenetics and more.
Alignment and Assembly
Clustal Omega
Multiple sequence alignment using the latest addition to the Clustal family
SeqPartitioner
Partition allele multisets from multiple alignments
Flye
A de novo assembler for single molecule sequencing reads, such as PacBio and Oxford Nanopore
Sequence Analysis
Complement/Reverse
Complement or Reverse DNA sequences without doing both
CpG Islands
Find targets for DNA methylation by predicting CpG islands
EMBOSS Mutate and Shuffle
Automatically mutate or shuffle sequences
EMBOSS Nucleotide Analysis
Predict transcription factors and protein coding regions
Glimmer Gene Prediction
Predict genes in microbial DNA with Glimmer
Heterozygotes
Identify heterozygotes in chromatograms with secondary peak calling
Microsatellites
Streamlined microsatellite genotyping
Polymorphic SSRs
Find polymorphic tandem repeats in alignments using Phobos
Repeat Finder
Find large, distant repeats
Sequence Classifier
Taxonomically classify samples against your own database of known sequences
Protein Analysis
Coiled Coils
Predict protein coiled coil regions
EMBOSS Protein Analysis
Predict secondary structure, antigenic regions and signal cleavage sites.
InterProScan
Automatically annotate proteins with InterPro domains
PDB Structure Aligner
Structural alignment of PDB protein sequences
Transmembrane Prediction
Predict transmembrane spanning regions of proteins
Data Management
Biocode LIMS
Integrated laboratory information management system for DNA barcoding
Dotmatics Platform Integration
Enables integration with Dotmatics Bioregister
GenBank Submission
Simplified submission of sequences, genomes, features, primers and traces
Recommended Resources
Plugin Development Kit
The Geneious Plugin Development Kit (PDK) allows you to take advantage of the Geneious Prime API to write your own plugins or workflows.
Wrapper Plugin Creator
Use the graphical wrapper plugin creator to run an existing command line program from inside Geneious Prime without writing any code
Get started with Geneious today