PDB Structure Aligner

Structural alignment of PDB protein sequences

PDB Structure Aligner Plugin

Align two protein structures in 3D space to produce a combined structure with the two overlayed. Structures can be obtained by importing PDB files or downloading directly from the NCBI Structure service in Geneious.

Quick Start

Install the plugin by downloading the gplugin file and dragging it in to Geneious or use the plugin manager in Geneious (under Tools - Plugins in the menu).

Once installed, run the plugin by selecting two protein structures and clicking on Align/Assemble - Protein Structure Alignment in the toolbar.


0.5 (16 Jan 2023) – Download

Fixed an issue with multi-model structures

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