Creating Automated Workflows

Use workflows to automate your analyses and run a set of operations with a single click.

Course Content

Introduction to Automated Workflows

Create a multi-step workflow starting from raw Sanger sequences and ending with a phylogenetic tree.
4 minutes

Creating Advanced Workflows

Learn to run the same workflow in parallel on multiple document or sequence sets using branching.
4 minutes

Recommended Resources

How do I script or automate Geneious Prime?

The Command Line Interface (CLI) allows the creation of custom pipelines.

Running workflows from the CLI

Workflows configured in the GUI interface can be exported and run in the command line.

Manual for Workflows

A guide to creating and using automated workflows in Geneious.

More Geneious Academy

Practice setting up an automatic workflow to run a pipeline from Sanger sequences to a phylogenetic tree.
In this video learn the basic steps to building a phylogenetic tree and manipulate it using the Geneious tree viewer.
Learn to align your chromatograms to a reference sequence, find variants and verify sequences in this video series.
Watch the series on how to access GenBank, and prepare and submit sequences and alignments to the GenBank database.
Get started with Geneious today