Mauve Alignment

Align bacterial genomes with the Mauve plugin. Convert Mauve alignments into standard alignments for downstream applications.

Course Content

Align Draft Genomes with Mauve

Order draft genomes against a reference sequence with the Mauve contig mover.
LENGTH 4 minutes

Align Whole Genomes with Mauve

Learn to align complete bacterial genomes with progressive Mauve.
LENGTH 5 minutes

Convert Mauve Alignment to Standard Alignment

Learn to convert a Mauve alignment into a standard alignment.
LENGTH 3 minutes

Recommended Resources

Plugin - Install Mauve

Align multiple genomes to identify large-scale evolutionary events using Mauve.

Why is my alignment taking so long?

How to choose the appropriate alignment algorithm for your dataset.

Manual for the Mauve Aligner

A guide to aligning bacterial genomes with Mauve in Geneious.

Manual for Installing Plugins

A guide extending to the functionality of Geneious Prime by installing plugins.

More Geneious Academy

TUTORIALAlignment with Mauve
Practice using the Mauve plugin to align genomes, complete genomes, and order draft genomes against a reference.
Read Tutorial
VIDEO SERIESPhylogenetic Trees
In this video learn the basic steps to building a phylogenetic tree and manipulate it using the Geneious tree viewer.
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VIDEO SERIESMultiple Alignments
Watch how to perform multiple alignments and assess levels of homology among sequences before constructing a phylogeny.
Watch Series
VIDEO SERIESAnnotate Sequences
Learn to annotate your sequences by customizing the view, adding new annotations or annotating your sequence with BLAST.
Watch Series
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