Metagenomic Analysis in Geneious Prime

Course Content

Preprocessing of NGS Amplicon Data

Learn how to preprocess NGS amplicon data, and trim and merge paired reads.
LENGTH 5 minutes

Cluster and Batch Blast Amplicon Data

Learn how to cluster and batch blast amplicon data in Geneious Prime.
LENGTH 5 minutes

Creating a Taxonomy Database

Learn how to create a taxonomy database in Geneious Prime.
LENGTH 4 minutes

Classifying Amplicon Data

Learn how to classify amplicon data with the Sequence Classifier in Geneious Prime.
LENGTH 4 minutes

Recommended Resources

Plugin - BBDuk Trimmer

Download the plugin for quality trimming and filtering your sequences.

How to preprocess NGS reads?

The best practice for preprocessing NGS reads in Geneious Prime.

Manual for Sequence Classifier

A guide to using the Sequence Classifier plugin in Geneious Prime.

De novo assembly advisor decision tree & validation table

Identify the most appropriate assembly algorithm for your data.

More Geneious Academy

TUTORIALHow to Analyze a Metagenomic Dataset in Geneious Prime
Assemble, filter and classify a 16S rRNA V4 amplicon dataset from paired Illumina MiSeq reads.
Read Tutorial
VIDEO SERIESDe Novo Assembly in Geneious Prime
Assemble short-read NGS data from scratch in Geneious Prime, including read normalization and circular contig assembly.
Watch Series
VIDEO SERIESAnnotate Sequences in Geneious Prime
Annotate your sequences by customizing the view, adding new annotations or annotating your sequence with BLAST.
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VIDEO SERIESCreate Automated Workflows in Geneious Prime
Use workflows to automate your analyses and run a set of operations with a single click.
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