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Geneious Prime
Geneious Biologics
Metagenomics Analysis
Learn how to assemble, filter and analyze an NGS amplicon metagenomic data set.
Course Content
Preprocessing of NGS Amplicon Data
INSIDE THE VIDEO
Learn how to preprocess NGS amplicon data, and trim and merge paired reads.
LENGTH
5 minutes
Cluster and Batch Blast Amplicon Data
INSIDE THE VIDEO
Learn how to cluster and batch blast amplicon data in Geneious Prime.
LENGTH
5 minutes
Creating a Taxonomy Database
INSIDE THE VIDEO
Learn how to create a taxonomy database in Geneious Prime.
LENGTH
4 minutes
Classifying Amplicon Data
INSIDE THE VIDEO
Learn how to classify amplicon data with the Sequence Classifier in Geneious Prime.
LENGTH
4 minutes
Recommended Resources
Plugin - BBDuk Trimmer
Download the plugin for quality trimming and filtering your sequences.
How to preprocess NGS reads?
The best practice for preprocessing NGS reads in Geneious Prime.
Manual for Sequence Classifier
A guide to using the Sequence Classifier plugin in Geneious Prime.
De novo assembly advisor decision tree & validation table
Identify the most appropriate assembly algorithm for your data.
More Geneious Academy
TUTORIALAmplicon Metagenomics
Assemble, filter and analyze an NGS amplicon metagenomic data set in Geneious Prime with this practical exercise.
VIDEO SERIESDe Novo Assembly
Watch the series and learn how to perform a de novo assembly of short-read NGS data and assemble circular contigs.
VIDEO SERIESAnnotate Sequences
Learn to annotate your sequences by customizing the view, adding new annotations or annotating your sequence with BLAST.
VIDEO SERIESCreating Automated Workflows
In this video series learn to use workflows to automate your analyses and run a set of operations with a single click.
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