Viewing 3D Structures in Geneious Prime

This video shows how to visualize PDB protein structures in Geneious Prime: rotate, zoom, and pan the 3D viewer, adjust color scheme, style, and effects such as spin, then select and highlight specific residues or atoms. A ribonuclease A example shows how to locate and highlight the three active site residues forming its catalytic triad.

Viewing 3D Protein Structures

Rotate, zoom, and pan a PDB protein structure in Geneious Prime, then adjust color, style, and effects such as spin. Select specific residues or atoms by list or common feature, highlight them, and locate active sites with Find in Document.
LENGTH 5 minutes

Recommended Resources

Manual for 3D protein structure viewer

A guide to using the 3D structure viewer in Geneious.

Plugin - EMBOSS Protein Analysis

Predict secondary structure, antigenic regions and signal cleavage sites.

Plugin - PDB Structure Aligner

Align two protein structures in 3D space to produce a combined structure with the two overlayed.

More Geneious Academy

Explore the controls in the 3D structure viewer and visualize active sites in a protein structure.
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Search with BLAST in Geneious Prime, single or in batch, against GenBank or a custom database, then review hits by E value, identity, and length.
Search NCBI’s GenBank database from Geneious Prime, download sequences and publications, then prepare metadata and submit your own sequence.
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