Call and Compare SNPs

Perform a reference assembly with next-generation sequencing (NGS) data and call SNPs on the assembled contig.

INSIDE THE VIDEO

How to use the Geneious variant finder to find SNPs in mapped data and set the parameters to filter out sequencing errors.

LENGTH

2 minutes

INSIDE THE VIDEO

How to filter SNPs based on their overlap with another annotation track or annotation type and filter out SNPs in regions of low coverage.

LENGTH

2 minutes

Recommended Resources

How to call SNPs on different assmeblies and alignments.

A guide to using the Find Variations/SNPs feature in Geneious.

Download the plugin for quality trimming and filtering your sequences.

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With this practical exercise, perform a reference assembly with NGS data and call SNPs on the assembled contig.

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