PDB Structure Aligner

Structural alignment of PDB protein sequences

Requires Geneious 4.8+

    Align two protein structures in 3D space to produce a combined structure with the two overlayed. Structures can be obtained by importing PDB files or downloading directly from the NCBI Structure service in Geneious.

    Install the plugin by downloading the gplugin file and dragging it in to Geneious or use the plugin manager in Geneious (under Tools - Plugins in the menu).

    Once installed, run the plugin by selecting two protein structures and clicking on Align/Assemble - Protein Structure Alignment in the toolbar.

    0.4 (28 Mar 2011) – Download

    Fixed an issue with multi-model structures