Geneious Prime
Sequence Analysis Tools:
From Data to Discovery, Faster

Geneious Prime is packed with fundamental molecular biology tools that we’ve created with input from real scientists around the world. Geneious Prime’s molecular biology and NGS analysis tools include cloning, primer design, and de novo assembly, and can be customized with plugins and algorithms.

NGS Analysis and Genomics

  • De novo assembly or reference mapping of Illumina, PacBio, or Nanopore reads (paired ends, barcodes) using industry leading algorithms, including SPAdes, TopHat and Minimap2.
  • Comprehensive analysis of data, including genome browser, contig visualization, SNP calling, and RNA-Seq expression analysis.
Assembly & MappingVisualization & Analysis

Sequence and Chromatogram Analysis

  • Trim, assemble, and view Sanger sequencing trace files; correct base calls; and create consensus sequences. Automatic annotation for gene prediction, motifs, translation, and variant calling.
  • Genotype microsatellite traces with automated ladder fitting and peak calling and generate tables of alleles.
Analysis & AnnotationMicrosatellites

Alignment and Tree Building

  • Perform pairwise and multiple alignments of DNA or protein using trusted algorithms, including MAFFT and ClustalW. View and edit alignments with real-time translation and highlighting.
  • Build phylogenetic trees using peer-reviewed algorithms, including RAxML and PAUP*, and adjust display settings for publication-ready graphics.
AlignmentTree Building

Molecular Cloning

  • View plasmid maps, automatically annotate vectors, and copy-paste sequences with annotations. Find restriction sites; digest, ligate, and perform Golden Gate, Gibson, and Gateway cloning.
  • Design primers, find CRISPR sites, and optimize codons. Track history and parent descendant lineage throughout cloning processes.
CloningPrimer Design

Searching, Sharing and Automation

  • Batch BLAST against NCBI and directly search GenBank. Centralize and collaborate on data with seamlessly integrated shared repositories. Import and export most industry standard file formats.
  • Setup automated workflows to increase efficiency, control business processes, and reduce human error in your research.
NCBI / GenBankImportingWorkflows

Geneious Server Database

  • Synchronized storage location for Geneious data accessible by multiple concurrent users
  • Greater level of control and increased security for data access for your organization over the standard shared database
  • Configurable to utilize existing authentication infrastructure such as LDAP to secure your data and simplify account management
  • Additional cost – please contact sales for further information

What’s New in Geneious Prime 2020

  • New features include long read sequence mapping with Minimap2, Clustal Omega aligner, better back translate and codon optimization, and more accurate annotation of CDS features.
  • Discover all of the brand new features, improvements, and enhancements in Geneious Prime 2020.
What's New

“Geneious cannot be overestimated! A (work) life without Geneious is no longer possible – it feels dark, cold and hostile…”

Jean-Charles Paterna, Viral Vector Facility (VVF) of the Neuroscience Center Zurich (ZNZ)