Comprehensive suite of molecular biology and sequence analysis tools

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Unlock the value of your sequence data

Sanger Sequencing Analysis

  • Improve your mapping accuracy and decrease your analysis time with simple sequence assembly and easy editing of contigs
  • Automatic annotation for gene prediction, motifs, translation, and variant calling
  • Genotype microsatellite traces with automated ladder fitting and peak calling and generate tables of alleles

Next Generation Sequencing Analysis

  • Beautiful visualizations of annotated genomes and assemblies displayed in a highly customizable sequence view
  • Powerful SNP variants analysis with your choice of algorithm or easy viewing of provided variant calls
  • Simple RNA-Seq expression analysis without any expertise in the statistical programming language, R, needed

Molecular Biology

  • Simulate a variety of molecular cloning operations in one step including restriction, Gateway, Golden Gate and In-Fusion cloning
  • Design and test PCR and sequencing primers with the elegant primer design tool and create your own searchable primer database
  • Powerful CRISPR tools make it quick and easy to find sites, design guide RNAs and analyze your editing results

NGS Pre-Processing, Assembly and Mapping

  • Accurate downstream analysis with extensive NGS pre-processing tools producing clean sequence data
  • Reliable reference mapping with exclusive mapping algorithms producing superior results
  • Flexible de novo genome assembly can handle data from all sequencing machines with alignment tools available for comparison and finishing

Alignment and Phylogenetics

  • Perform pairwise and multiple alignments of DNA or protein using trusted algorithms, including MAFFT and Clustal Omega
  • Build phylogenetic trees using peer-reviewed algorithms, including RAxML and PAUP*, and adjust display settings for publication-ready graphics


  • Rapidly search all key databases at NCBI for literature, DNA and protein sequence information or set up automated agents to do the searching for you
  • BLAST search against sequences in NCBI databases with results returned directly into Geneious Prime or set up a local database and BLAST it locally
  • Submit sequences directly to GenBank including genomes, features, primers traces and more

What’s New in Geneious Prime 2021.2?

  • Updates include virtual gel improvements, viewing CRISPR cut sites, batch editing annotations and viewing invalid CDS annotations
  • Discover all of the brand new features, improvements, and enhancements in Geneious Prime 2021.2

The backbone of your scientific research

Data Management

Increase process efficiency and improve collaboration with intuitive folder-based organization and a seamlessly integrated shared database. Simple drag and drop for import and export of a large number of common file formats including GenBank, SnapGene and FASTQ.


Extend the functionality of Geneious Prime with our collection of plugins available for assembly, alignment, phylogenetics and more. Integrate with existing systems and add your own custom algorithms using a highly interoperable API.


Create your own automated workflows or use in-built workflows to increase efficiency and reduce human error. Automate external database searches to continuously receive the latest information on genomes, sequences, and protein structures.


We care a great deal about finding new ways to get science done faster and more efficiently. Our development team works constantly throughout the year to ensure Geneious Prime runs beautifully and there’s always a new release around the corner.

Geneious is an absolutely beautiful package to work with. We love it and we are telling everyone about it.
Charles MooreNovartis Pharma AG, Switzerland

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