NGS Visualization and Analysis
Beautiful visualization of annotated genomes and assemblies, powerful variant calling and RNA-Seq expression analysis.
Powerful SNP Variants Analysis
Find SNP/Variants with either the versatile Geneious algorithm or well known FreeBayes. If you have variant calls from an external pipeline or provider, simply drag in a VCF. Identify novel variants by programmatic comparison with known variants or sort and filter using our dynamic tabular view then see the genomic context by switching to the synchronized sequence view.
Simple RNA-Seq Expression Analysis
Calculate expression levels from mapped reads then perform pairwise comparison between samples to identify differentially expressed genes. Without any expertise in the statistical programming language, R, use the industry standard DESeq2 package to compare expression between two conditions, each with replicate samples.
Switch to the PCA Plot tab to check the quality of your data using principal component analysis then switch to the interactive volcano plot to spot genes of interest. After selecting a gene in the volcano plot you can jump straight to it in the sequence view where all genes have heatmap coloring based on differential expression.
Assemble filter and analyze metagenomic datasets in Geneious Prime. Amplicon data can be classified using the Sequence Classifier or the 16S Biodiversity Tool.
EXPLORE GENEIOUS PRIME
Geneious is an absolutely beautiful package to work with. We love it and we are telling everyone about it.