Awesome sequence alignment visualization and editing
- Show annotations on the alignment and edit at the same time
- Drag to remove or insert gaps
- Join sequences together
- Strip columns
- Type directly into an alignment
- Correct bad calls
- Viewing and coloring by translation alongside allows you to correct coding sequences
- View phylogeny alongside the alignment and link back to a tree
- Similarity and sequence logo graphs
- Real-time updates to the statistics panel (real-time) update according to selection
- Spot disagreements easily with highlighting
Access a variety of DNA alignments including ClustalW, MUSCLE and MAFFT from within one software program
Save time and stop jumping around from program to program. Select a specific task to perform without leaving Geneious. Built in alignments include:
- The Geneious Aligner
- Local Re-alignment
- Pairwise alignment
- Translation Align
- Consensus Align
- MAFFT- available as a plugin
- MAUVE- available as a plugin
- LastZ – available as plugin
Your data your way
No matter what alignment you choose, the data is still yours to edit and annotate in a way that works for you.
Better genome alignments are just a few clicks away.
Pairwise Alignment – Develop the skills needed to align pairs of DNA and protein sequences with Geneious using dotplots and alignment algorithms.
Aligning Bacterial Genomes with Mauve – Learn how to align bacterial genomes using the Mauve plugin for Geneious. This tutorial covers alignment of complete genomes and ordering of draft genomes against a reference.
More Geneious Prime Features
Assembly and Mapping – De novo assembly or reference mapping using industry leading algorithms, including TopHat and Velvet.
NGS Visualization and Analysis – Comprehensive analysis of data, including genome browser, contig visualization, SNP calling, and RNA-Seq expression analysis.
Phylogenetic Trees – Build phylogenetic trees using peer-reviewed algorithms, including RAxML and PAUP*
Molecular Cloning – View plasmid maps, automatically annotate vectors, find restriction sites; digest, ligate, and perform Golden Gate, Gibson, and Gateway cloning.
BLAST / NCBI – Connect to NCBI and PubMed, submit sequences directly to GenBank, BLAST sequences and search your own database.
Import Data – Import and convert common file types as well as their annotations and notes with a simple drag and drop
I have found Geneious to be one of the most intuitive and powerful sequence analysis programs that I have used in all my years working in the molecular biology field. Thanks for making my life so much easier.
Geneious is an absolutely beautiful package to work with. We love it and we are telling everyone about it.
This program is wonderful! I was desperately looking for a software program that would make analyzing my sequencing data less painful. Thank you for developing a quality, user-friendly program. The interface is great!
Geneious is paramount in my research so I can’t be without it for too long.
The combination of powerful analytic features, intuitive navigation and file organization, and the responsiveness that representatives have shown to the inclusion of new functions has made us big fans of this software.
Geneious is a great software… I just want to express my appreciation to Biomatters to come up with such good product.
For many years I’ve wanted a friendly, menu-driven interface to our Glimmer program, but my research group has never had the resources available to build one. The Geneious Glimmer interface is terrific; it will allow any scientist to find genes in almost any bacterial, viral, or archaeal sequence, without requiring background expertise in Unix command-line programs. I’m also very pleased that Geneious makes Glimmer available across multiple computer platforms, including Windows and Mac.
We’ve been using our Geneious licenses a lot and really like the software. We’ve written several plug-ins ourselves and are using it more and more to analyze our data.
It’s not just about the buttons. From a user’s perspective, Phobos generates annotations, and Geneious handles annotations beautifully. The integration was obvious! And from a technical perspective it was easy to achieve, because it was simple to parse the outputs from Phobos into repeat annotations for the Geneious interface.
TopHat is a robust tool, but it was designed with experienced bioinformatics scientists in mind. Geneious makes TopHat accessible to many more users through the same powerful, intuitive user interface they have with other Geneious analysis tasks.