Calling and Comparing SNPs
Perform a reference assembly with next-generation sequencing (NGS) data and call SNPs on the assembled contig.
Calling SNPs
INSIDE THE VIDEO
How to use the Geneious variant finder to find SNPs in mapped data and set the parameters to filter out sequencing errors.
LENGTH
2 minutes
Comparing SNPs
INSIDE THE VIDEO
How to filter SNPs based on their overlap with another annotation track or annotation type and filter out SNPs in regions of low coverage.
LENGTH
2 minutes
Recommended Resources
CALLING AND COMPARING SNPS
FAQ
Can I call SNPs on individual sequences aligned to a reference?
How to call SNPs on different assmeblies and alignments.
MANUAL
Instructions for Finding Variations/SNPs
A guide to using the Find Variations/SNPs feature in Geneious.
VIDEO
How to Map to Reference
Select a reference sequence, choose an algorithm, set the sensitivity and map to reference.
GENEIOUS ACADEMY
